The factory cushions tend to sit proud of the hub flats but should seat fine once axle nipped up if you can get it to assemble that far. There is a slight tapper narrower into bottom of the cushion hole so rubbers tend to jam up a bit with full seating.
When I make my own from fiber enforce conveyor belt I nip em down till they just hold off seating ~1/16". I don't like to grease em as it helps mount if the cushion friction help hold in place a bit while aligning to nip up. Whole darn rear feels all misaligned and sloppy till split axle gets well tightened, while holding brake to center that best able.