Unless you have a milling machine and the machinist skills to use it, I strongly believe that you should stay with the standard nuts and bolts.
The hole locations in the engine and cradle are not exact. To get a tighter fit between the cradle and engine bolts means that you must get the locations much closer to exact. Simply reaming all the holes out to allow 10mm bolts through when assembling means that you've accomplished nothing except making your bike non-standard.
If you do decide to do it, which holes do you intend to use as the currently correctly placed ones? Do you have any info on how the engine and cradle should exactly align?