Are you sure the carb slides are opening fully? I agree that it sounds like a fueling issue IF the ignition/cam timing is correct. A totally stock 750/850 Commando in proper running order has no trouble at all going easily past 100MPH with no hesitation.
It's quite a list of mods; are they based on reliable information that the specific setup works well on a 750 Commando? I have a LOT of experience with engine mods on cars and have seen everything from high performance cams to high compression pistons to free flow exhausts to larger carbs, etc, REDUCE performance compared to stock engines because the mod(s) did not work well together. TBH, I'm a little surprised to see a "performance cam" and higher compression pistons with stock exhaust/induction but IF that setup is well researched and shown to work well, that's all that matters.
Cam timing could certainly cause the problem as could retarded ignition timing but since they have been checked, one could ASSUME they are OK.

Clogged intake/exhaust could also cause it but, again, being new that's extremely unlikely.