If you're particularly fond of the bike and want to keep it, rather than sell it and buy a Mk3 I think what you're proposing is certainly do-able. If you fitted a Colorado Norton Works electric start you would also be fitting a belt drive (comes as part of the electric starter it) which means the gearbox then doesn't need to move to adjust a primary chain, so a crossover shaft becomes fairly straightforward to do. You would need to use MK3 inner and outer gearbox cases and the crossover shaft, and machine a hole in your inner and outer primary covers, but I can't see any of that being all that difficult. The rear brake is cable operated, so you'd only need to find or fabricate a suitable right side brake pedal and use a longer cable. Again I wouldn't think it was that hard to do. Compared to some of the projects undertaken by others on this site (e.g. mono shock and single sided swingarm conversions etc) I'd say what you're proposing would rank as "medium difficulty".