Mounting the "ham can" airbox to your bike isn't that difficult. You would need to remove the ignition switch bracket off the rear air filter plate. Also you would need to modify the battery tray by installing two captive nuts just inboard of the existing captive nuts. This is what I did with my Mark IIA tray (basically a Mark III with the added Dzus bracket).
I riveted in two aircraft type nut plates. However, there are press in, weld in, braze in, etc. options as well.
The air filter assembly will bolt in just fine with those two modifications. The top of the airbox mounts exactly like a Mark III and the lower part of the air filter sits a little farther back than originally designed. However, it's not even noticeable to the eye. If anything it makes the air filter easier to remove and replace.
Fitting a pre-Mark IIA side panel may be a little more involved. You would have to remove the tool box portion of the side panel. Then I think you could put a tab on the bottom of the side panel that mimics the Mark III side panel to hold the rubber mount that fits between the Z plate and the frame.
I had a problem with my Mark IIA when I replaced the air filter assembly with the ham can style filter. The battery is not well supported and it fell over when braking hard on a steep downhill. I added an extra strap to my battery tray to help secure the battery.This may not be a problem with the Mark III because the battery is physically larger than what was in my Mark IIA. Also the battery wiring could possibly help hold the battery from falling over on a Mark III.
This is a picture showing the extra mounts for the battery strap:
One last thought for the pre Mark IIA side panel, I machined an aluminum spacer that fits around the Dzus stud retainer. It's held on with two set screws. The rivets that hold the Dzus S-spring on the side panel need to be replaced with flush rivets for this spacer to work. My thinking is that this spacer gives a more stable platform for the side panel and it reduces any side load stresses on the snap ring. I have yet to test this idea. I am still using my Mark IIA side panels on my bike.
I hope some of these ideas help.
Peter Joe