I agree with glenn. If the bike was advertized as a matching numbers bike and it's not one, then the guy who sold it to you owes you the difference in value. If it's between 10 and 15 % as a general rule then you should talk to the seller and get some money back in that % range.
I bought a kickstart lever off ebay. When I recieved it, I found that had been rethreaded to a coarse thread size. When I contacted the seller, he agreed to refund me some money (I can't remember how much atm..) and it would be my problem if it didn't last very long... So far so good... at least the seller was straight up about not knowing it was rethreaded, and compensated me for his oversight.
I also recently bought 2 wheel bearings off ebay that were advertised as -2RS (which is a sealed bearing, rubber shielded both sides) The bearing that came is an -RS bearing (rubber shielded one side) I have an email out to the seller and he's not replying to my email. I used the bearings because they are a rare size, but because it's in a custom application there aren't any stock grease seals available for that wheel I am using them in, so I had to use the sealed side toward the outside which limits my ability to regrease the bearings without pulling one of the bearings out of the wheel... The bearings will be good for a very long time, but they aren't a "2RS" as advertised, and the seller should make that clearer in his ad. I would have bought them anyway since this bearing size is hard to find, but stuff should be what a seller says it is... not something similar.
Matching numbers don't mean much to me, even though my bike IS a matching numbers bike... Although I do have a later model disc brake front end with yamaha cast wheels, front and back, and numerous non-stock modifications...