No, but there are shims under the clutch basket that will mess with that line up too. You need to check that your inner primary is not bent also. You need to put the gasket on the crank, install the inner primary without any shims on the stud from the cradle, measure the clearance and get a shim/washer that will fit in there so when you tighten down the nut on the central stud the inner primary doesn't bend, but you also need to line up the clutch basket with the drive sprocket. Have you seen the information on Old Britts? It's all there. It's also in the workshop manual. Then you should check that your left side swing arm end is not hitting the inner primary, as it probably is now.
Read about the clutch circlip and torquing the clutch hub nut also. Don't over do it and use blue locktite. Go to the Old Britts site and read up on it. Better than me explaining it, plus you can print it out.
It usually takes 3 times to get these things right, and that's when you know what you're doing.
Dave
69S