I'd have to agree with Dances about using the standard studs, nuts, etc., although I'd go with the later design that used 3/8" studs, as opposed to the earlier 5/16" fasteners. Early cranks, up until '73 or so, used a combination of 5/16" bolts and studs, while later ones used 5/16" studs for all the fasteners. In 1975 they went to 3/8" studs all around, along with the other design changes to the crankshaft for the Mk3.
Having said that, I have to admit to using NAS nuts and bolts and AN studs on some race crankshafts. If you choose to do that, there are a couple things to keep in mind.
First, note that the top (closest to the flywheel edge) two fasteners (bolts in early Commandos, studs in later models) are a tighter fit than the other four fasteners. That's an intentional design detail from the factory. The tight fit of those two fasteners and the dowel pin are what locate the crankshaft halves to the flywheel very precisely. If you replace the fasteners, you want to be sure you still have that fit for the top two bolts/studs. It is pretty simple to keep that fit when converting the earlier crankshafts from 5/16" fasteners to 3/8" fasteners, which was a common racer mod back in the day. All we had to do was use a precision reamer to fit the top two bolts, after drilling them slightly undersize for 3/8". The other four fasteners could be simply drilled to size. This is a picture of a crank I did back in the late '70s showing the fasteners I used.
You'll note that the heads of the top two bolts, as well as the nuts, are reduced in size to fit the spot facing on the crankshaft halves. You'll also note that studs are still required for the two fasteners by the dowel, because you can't get bolts to clear the counterweights. Dances' comment about balance problems with using bolts instead of studs is well taken. I installed the bolts in a specific configuration, and then had the crankshaft balanced. As long as I kept track of the fastener conguration when disassembling and reassembling the crankshaft, the balance was undisturbed. If I were doing the same thing today, I'd probably just go with high strength studs and nuts instead. I used the 12-point NAS nuts and bolts because I was copying what Ron Wood and Axtell had done with Ron's crankshafts back before he had his one-piece crankshafts made. Besides, it looked really trick!
Ken